X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=blastdb.hpp;h=50a8379b68ec89130b7df1892aab4538daa77a1e;hb=250e3b11b1c9c1e1ad458ab6c7e71ac2e67e11d9;hp=9b8965d017b69a8f8cf27884261ea1095f77e176;hpb=1cf188b912d6da8f2cd03dd71cecef664a699c1a;p=mothur.git

diff --git a/blastdb.hpp b/blastdb.hpp
index 9b8965d..50a8379 100644
--- a/blastdb.hpp
+++ b/blastdb.hpp
@@ -16,8 +16,8 @@
 class BlastDB : public Database {
 
 public:
-	BlastDB(float, float, float, float);
-	BlastDB();
+	BlastDB(string, float, float, float, float, string, int);
+	BlastDB(string, int);
 	~BlastDB();
 	
 	void generateDB();
@@ -26,12 +26,15 @@ public:
 	vector<int> findClosestMegaBlast(Sequence*, int, int);
 	
 private:
+	
+	string scrubName(string);
+	
 	string dbFileName;
 	string queryFileName;
 	string blastFileName;
 	string path;
 	
-	int count;
+	int count, threadID;
 	float gapOpen;
 	float gapExtend;
 	float match;