X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=blastdb.hpp;h=50a8379b68ec89130b7df1892aab4538daa77a1e;hb=250e3b11b1c9c1e1ad458ab6c7e71ac2e67e11d9;hp=844f7f1fdc78abe8e3a1e38ca6045e1584a454db;hpb=39a0a86958038d71083fad3a1a50c02ba9c2fc67;p=mothur.git

diff --git a/blastdb.hpp b/blastdb.hpp
index 844f7f1..50a8379 100644
--- a/blastdb.hpp
+++ b/blastdb.hpp
@@ -16,22 +16,25 @@
 class BlastDB : public Database {
 
 public:
-	BlastDB(float, float, float, float);
-	BlastDB();
+	BlastDB(string, float, float, float, float, string, int);
+	BlastDB(string, int);
 	~BlastDB();
 	
 	void generateDB();
 	void addSequence(Sequence);
 	vector<int> findClosestSequences(Sequence*, int);
-	vector<int> findClosestMegaBlast(Sequence*, int);
+	vector<int> findClosestMegaBlast(Sequence*, int, int);
 	
 private:
+	
+	string scrubName(string);
+	
 	string dbFileName;
 	string queryFileName;
 	string blastFileName;
 	string path;
 	
-	int count;
+	int count, threadID;
 	float gapOpen;
 	float gapExtend;
 	float match;