X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=blastdb.hpp;fp=blastdb.hpp;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=50a8379b68ec89130b7df1892aab4538daa77a1e;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/blastdb.hpp b/blastdb.hpp
deleted file mode 100644
index 50a8379..0000000
--- a/blastdb.hpp
+++ /dev/null
@@ -1,45 +0,0 @@
-#ifndef BLASTDB_HPP
-#define BLASTDB_HPP
-
-
-/*
- *  blastdb.hpp
- *  
- *
- *  Created by Pat Schloss on 12/22/08.
- *  Copyright 2008 Patrick D. Schloss. All rights reserved.
- *
- */
-
-#include "mothur.h"
-
-class BlastDB : public Database {
-
-public:
-	BlastDB(string, float, float, float, float, string, int);
-	BlastDB(string, int);
-	~BlastDB();
-	
-	void generateDB();
-	void addSequence(Sequence);
-	vector<int> findClosestSequences(Sequence*, int);
-	vector<int> findClosestMegaBlast(Sequence*, int, int);
-	
-private:
-	
-	string scrubName(string);
-	
-	string dbFileName;
-	string queryFileName;
-	string blastFileName;
-	string path;
-	
-	int count, threadID;
-	float gapOpen;
-	float gapExtend;
-	float match;
-	float misMatch;
-	
-};
-
-#endif