X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=blastdb.cpp;h=aadff822bc9efb930f3a8f4c969fc3e5bc08e3fb;hb=47af4126c6ece121172cd486c1ca7eeb1ccae2de;hp=3e1210b46abaa4c01314a8702feea3eded345c11;hpb=1cf188b912d6da8f2cd03dd71cecef664a699c1a;p=mothur.git

diff --git a/blastdb.cpp b/blastdb.cpp
index 3e1210b..aadff82 100644
--- a/blastdb.cpp
+++ b/blastdb.cpp
@@ -141,13 +141,13 @@ vector<int> BlastDB::findClosestMegaBlast(Sequence* seq, int n, int minPerID) {
 		
 		while(!m8FileHandle.eof()){
 			m8FileHandle >> dummy >> templateAccession >> searchScore >> numBases >> mismatch >> gap >> startQuery >> endQuery >> startRef >> endRef >> eScore >> score;
-			//cout << dummy << '\t' << templateAccession << '\t' << searchScore << '\t';
+			//cout << dummy << '\t' << templateAccession << '\t' << searchScore << '\t' << numBases << '\t' << mismatch << '\t' << gap << '\t' << startQuery << '\t' << endQuery << '\t' << startRef << '\t' << endRef << '\t' << eScore << '\t' << score << endl; 
 			
 			//get rest of junk in line
 			//while (!m8FileHandle.eof())	{	char c = m8FileHandle.get(); if (c == 10 || c == 13){	break;	}else{ cout << c; }	} //
 				//cout << endl;
 			m->gobble(m8FileHandle);
-			if (score >= minPerID) {
+			if (searchScore >= minPerID) { 
 				topMatches.push_back(templateAccession);
 				Scores.push_back(searchScore);
 			}