X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=blastalign.hpp;h=31688bd86d77386d384fef73bb9c3289e681ada3;hb=541bab1dac00688b4c3a8c4a95ab464412663c50;hp=0f755d852cb0fdb793c40e88613dd8b19076c991;hpb=526a868606faa50caf86e7399f7554c0335b39e5;p=mothur.git

diff --git a/blastalign.hpp b/blastalign.hpp
index 0f755d8..31688bd 100644
--- a/blastalign.hpp
+++ b/blastalign.hpp
@@ -1,3 +1,7 @@
+#ifndef BlastAlignment_H
+#define BlastAlignment_H
+
+
 /*
  *  blastalign.hpp
  *  
@@ -13,17 +17,21 @@
  
 #include "mothur.h"
 
+
 class BlastAlignment : public Alignment {
 
 public:
 	BlastAlignment(float, float, float, float);
 	~BlastAlignment();
 	void align(string, string);
+	void setMatrix(int){};
+	
 private:
 
 	string candidateFileName;
 	string templateFileName;
 	string blastFileName;
+	string path;
 
 	void setPairwiseSeqs();
 	float match;
@@ -32,3 +40,7 @@ private:
 	float gapExtend;
 };
 
+#endif
+
+
+