X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=blastalign.hpp;fp=blastalign.hpp;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=31688bd86d77386d384fef73bb9c3289e681ada3;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/blastalign.hpp b/blastalign.hpp
deleted file mode 100644
index 31688bd..0000000
--- a/blastalign.hpp
+++ /dev/null
@@ -1,46 +0,0 @@
-#ifndef BlastAlignment_H
-#define BlastAlignment_H
-
-
-/*
- *  blastalign.hpp
- *  
- *
- *  Created by Pat Schloss on 12/16/08.
- *  Copyright 2008 Patrick D. Schloss. All rights reserved.
- *
- *	This is a basic alignment method that gets the blast program to do the heavy lifting.  In the future, we should
- *	probably incorporate NCBI's library so that we don't have to call on a user-supplied executable.  This is a child
- *	of the Alignment class, which requires a constructor and align method.
- *
- */
- 
-#include "mothur.h"
-
-
-class BlastAlignment : public Alignment {
-
-public:
-	BlastAlignment(float, float, float, float);
-	~BlastAlignment();
-	void align(string, string);
-	void setMatrix(int){};
-	
-private:
-
-	string candidateFileName;
-	string templateFileName;
-	string blastFileName;
-	string path;
-
-	void setPairwiseSeqs();
-	float match;
-	float mismatch;
-	float gapOpen;
-	float gapExtend;
-};
-
-#endif
-
-
-