X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=blastalign.cpp;h=04c7716de2958ec69353a53c0d737f8ae9cfe9dd;hb=74844a60d80c6dd06e3fb02ee9b928424f9019b0;hp=624210f5f977ac505a32119e574561ec7e92dcc2;hpb=28d65de5f06f5b033109a3b8bbb6d3c4060914d3;p=mothur.git

diff --git a/blastalign.cpp b/blastalign.cpp
index 624210f..04c7716 100644
--- a/blastalign.cpp
+++ b/blastalign.cpp
@@ -102,9 +102,9 @@ void BlastAlignment::setPairwiseSeqs(){	//	This method call assigns the blast ge
 			pairwiseLength = 0;
 			
 //			string dummy;
-//			while(dummy != "query:"){	mothurOut(dummy, ""); mothurOutEndLine(); blastFile >> dummy;	}
+//			while(dummy != "query:"){	m->mothurOut(dummy, ""); m->mothurOutEndLine(); blastFile >> dummy;	}
 //			blastFile >> seqBend;
-//			mothurOut(toString(seqBend), ""); mothurOutEndLine();
+//			m->mothurOut(toString(seqBend), ""); m->mothurOutEndLine();
 //			for(int i=0;i<seqBend;i++){
 //				seqAaln += 'Z';
 //				seqBaln += 'X';