X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=blastalign.cpp;fp=blastalign.cpp;h=9af31dfa3e65e130d0bc347600aa28405f94b7f4;hb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;hp=5e7fb61aa77e7c34ca7367393766b1a5455c9213;hpb=36a867cbd85d9c276d3c8d13f25a150bbbe2466b;p=mothur.git

diff --git a/blastalign.cpp b/blastalign.cpp
index 5e7fb61..9af31df 100644
--- a/blastalign.cpp
+++ b/blastalign.cpp
@@ -18,12 +18,11 @@
 
 //**************************************************************************************************/
 
-BlastAlignment::BlastAlignment(float go, float ge, float m, float mm) : 
-			match(m),				//	This is the score to award for two nucleotides matching (match >= 0)
+BlastAlignment::BlastAlignment(float go, float ge, float ma, float mm) : 
+			match(ma),				//	This is the score to award for two nucleotides matching (match >= 0)
 			mismatch(mm)			//	This is the penalty to assess for a mismatch (mismatch <= 0)
 {
-	globaldata = GlobalData::getInstance();
-	path = globaldata->argv;
+	path = m->argv;
 	path = path.substr(0, (path.find_last_of('m')));
 	
 	gapOpen = abs(go);				//	This is the penalty to assess for opening a gap (gapOpen >= 0)