X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=blastalign.cpp;fp=blastalign.cpp;h=0645fb031f0d2a4e98b4caba5695f30ecd555474;hb=510b1cfc25cd79391d6973ca20c5ec25fb1bb3b2;hp=cb6abf97b8840aa32bfc4e9bf95315e30e4dbf10;hpb=37e0d78135e32b5aa58ca163f4d416716c78b67f;p=mothur.git

diff --git a/blastalign.cpp b/blastalign.cpp
index cb6abf9..0645fb0 100644
--- a/blastalign.cpp
+++ b/blastalign.cpp
@@ -102,9 +102,9 @@ void BlastAlignment::setPairwiseSeqs(){	//	This method call assigns the blast ge
 			pairwiseLength = 0;
 			
 //			string dummy;
-//			while(dummy != "query:"){	cout << dummy << endl;blastFile >> dummy;	}
+//			while(dummy != "query:"){	mothurOut(dummy, ""); mothurOutEndLine(); blastFile >> dummy;	}
 //			blastFile >> seqBend;
-//			cout << seqBend << endl;
+//			mothurOut(toString(seqBend), ""); mothurOutEndLine();
 //			for(int i=0;i<seqBend;i++){
 //				seqAaln += 'Z';
 //				seqBaln += 'X';