X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=binsequencecommand.h;h=6ea7305265a6725a6a6290f6de028b307c5e8a0b;hb=f663afa231c9bc1b5e18e0ea3bdd2b2ee784f5b2;hp=aceba65da17315de31515750a62fc53f4b7b9a48;hpb=0470f6d037aacb3563c3f7010708120a4a67d4e6;p=mothur.git

diff --git a/binsequencecommand.h b/binsequencecommand.h
index aceba65..6ea7305 100644
--- a/binsequencecommand.h
+++ b/binsequencecommand.h
@@ -36,18 +36,15 @@ private:
 	InputData* input;
 	FastaMap* fasta;
 	GroupMap* groupMap;
-	OptionParser* parser;
-	map<string, string> parameters;
-	map<string, string>::iterator it;
 	bool abort, allLines;
-	set<int> lines; //hold lines to be used
 	set<string> labels; //holds labels to be used
-	string filename, fastafile, namesfile, groupfile, line, label;
+	string filename, fastafile, namesfile, groupfile, label, outputDir;
 	ofstream out;
 	ifstream in, inNames;
+	vector<string> outputNames;
 	
 	void readNamesFile();
-	int process(ListVector*, int);
+	int process(ListVector*);
 };
 
 #endif