X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=binsequencecommand.h;h=6ea7305265a6725a6a6290f6de028b307c5e8a0b;hb=cf9a187f89caf821e454d1547d9b3893e17a1e76;hp=6f9f69d3a7b13dbabe73c09e21e787f55dadff81;hpb=cd37904452dc95b183ff313ff05720c562902487;p=mothur.git

diff --git a/binsequencecommand.h b/binsequencecommand.h
index 6f9f69d..6ea7305 100644
--- a/binsequencecommand.h
+++ b/binsequencecommand.h
@@ -37,14 +37,14 @@ private:
 	FastaMap* fasta;
 	GroupMap* groupMap;
 	bool abort, allLines;
-	set<int> lines; //hold lines to be used
 	set<string> labels; //holds labels to be used
-	string filename, fastafile, namesfile, groupfile, line, label;
+	string filename, fastafile, namesfile, groupfile, label, outputDir;
 	ofstream out;
 	ifstream in, inNames;
+	vector<string> outputNames;
 	
 	void readNamesFile();
-	int process(ListVector*, int);
+	int process(ListVector*);
 };
 
 #endif