X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=binsequencecommand.h;fp=binsequencecommand.h;h=5bdd401f9411e4abb21aa6a12284bfa98f4b5bda;hb=6c2b1e530a5c0bb87040e58a3e410097acdfcc3d;hp=1fb5664b0c018c4120881055014ec08a4e6d5559;hpb=f509429e06e545bde69c97cacc0eb436775bd329;p=mothur.git

diff --git a/binsequencecommand.h b/binsequencecommand.h
index 1fb5664..5bdd401 100644
--- a/binsequencecommand.h
+++ b/binsequencecommand.h
@@ -16,6 +16,7 @@
 #include "listvector.hpp"
 #include "fastamap.h"
 #include "groupmap.h"
+#include "counttable.h"
 
 class BinSeqCommand : public Command {
 	
@@ -36,14 +37,14 @@ public:
 	void help() { m->mothurOut(getHelpString()); }		
 	
 private:
-	
+	CountTable ct;
 	ListVector* list;
 	InputData* input;
 	FastaMap* fasta;
 	GroupMap* groupMap;
 	bool abort, allLines;
 	set<string> labels; //holds labels to be used
-	string filename, fastafile, listfile, namesfile, groupfile, label, outputDir;
+	string filename, fastafile, listfile, namesfile, groupfile, countfile, label, outputDir;
 	ofstream out;
 	ifstream in, inNames;
 	vector<string> outputNames;