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+#ifndef BINSEQCOMMAND_H
+#define BINSEQCOMMAND_H
+/*
+ *  binsequencecommand.h
+ *  Mothur
+ *
+ *  Created by Sarah Westcott on 4/3/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+/* The bin.seqs command outputs a .fasta file for each distance you specify appending the OTU number to each name. */
+
+#include "command.hpp"
+#include "inputdata.h"
+#include "listvector.hpp"
+#include "fastamap.h"
+#include "groupmap.h"
+
+class BinSeqCommand : public Command {
+	
+public:
+	BinSeqCommand(string);	
+	BinSeqCommand();
+	~BinSeqCommand();
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "bin.seqs";			}
+	string getCommandCategory()		{ return "Sequence Processing"; }
+	string getHelpString();	
+	string getCitation() { return "http://www.mothur.org/wiki/Bin.seqs"; }
+	string getDescription()		{ return "maps sequences to otus"; }
+	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }		
+	
+private:
+	
+	ListVector* list;
+	InputData* input;
+	FastaMap* fasta;
+	GroupMap* groupMap;
+	bool abort, allLines;
+	set<string> labels; //holds labels to be used
+	string filename, fastafile, listfile, namesfile, groupfile, label, outputDir;
+	ofstream out;
+	ifstream in, inNames;
+	vector<string> outputNames;
+	
+	void readNamesFile();
+	int process(ListVector*);
+};
+
+#endif