X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=binsequencecommand.cpp;h=2117daff4f2558e26bcf0008666f87bee0180f4d;hb=f816b683e586575bfe3479760a8afd5ab08e8573;hp=4977cad1f769690e300013e89c936eefb4228e84;hpb=19fcbbdba99658f5eca244803280f9ee7f9f6607;p=mothur.git

diff --git a/binsequencecommand.cpp b/binsequencecommand.cpp
index 4977cad..2117daf 100644
--- a/binsequencecommand.cpp
+++ b/binsequencecommand.cpp
@@ -167,7 +167,7 @@ BinSeqCommand::BinSeqCommand(string option) {
 			}
 			
 			namesfile = validParameter.validFile(parameters, "name", true);
-			if (namesfile == "not open") { abort = true; }	
+			if (namesfile == "not open") { namesfile = ""; abort = true; }	
 			else if (namesfile == "not found") { namesfile = ""; }
 			else {  m->setNameFile(namesfile); }
 
@@ -176,6 +176,11 @@ BinSeqCommand::BinSeqCommand(string option) {
 			else if (groupfile == "not found") { groupfile = ""; }
 			else { m->setGroupFile(groupfile); }
 			
+			if (namesfile == ""){
+				vector<string> files; files.push_back(fastafile); 
+				parser.getNameFile(files);
+			}
+			
 		}
 	}
 	catch(exception& e) {