X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bgzf.h;h=68375b4e07f523ebe6c6b2efdb50b2951977695a;hb=3ddb3942053df00fdae714e77cbc2f5618db617e;hp=4ed5c2996001ab74a501e84ded93abf2c426bfa7;hpb=f93dae0d03856955f9424e8b2aaf261304ca647e;p=samtools.git

diff --git a/bgzf.h b/bgzf.h
index 4ed5c29..68375b4 100644
--- a/bgzf.h
+++ b/bgzf.h
@@ -9,22 +9,31 @@
  * or functionality.
  */
 
-#ifndef __BCGZ_H
+#ifndef __BGZF_H
 #define __BGZF_H
 
 #include <stdint.h>
 #include <stdio.h>
-#include "zlib.h"
 #include <stdbool.h>
-//#include "zutil.h"
+#include <zlib.h>
+#ifdef _USE_KNETFILE
+#include "knetfile.h"
+#endif
 
 //typedef int8_t bool;
 
 typedef struct {
     int file_descriptor;
     char open_mode;  // 'r' or 'w'
-    bool owned_file;
+    bool owned_file, is_uncompressed;
+#ifdef _USE_KNETFILE
+	union {
+		knetFile *fpr;
+		FILE *fpw;
+	} x;
+#else
     FILE* file;
+#endif
     int uncompressed_block_size;
     int compressed_block_size;
     void* uncompressed_block;