X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bcftools%2Fvcf.c;h=51ccb74521ead6cb7b59baa287b0f102a20683f1;hb=4fe4b27b44d067c21948870d9e48976662dec397;hp=d441d7f0b278bf0d6d72eb05d0e641a0926b04ef;hpb=4e4e3fdee9dd2331d38effa3f3af29a0a2c4f268;p=samtools.git

diff --git a/bcftools/vcf.c b/bcftools/vcf.c
index d441d7f..51ccb74 100644
--- a/bcftools/vcf.c
+++ b/bcftools/vcf.c
@@ -139,6 +139,7 @@ int vcf_read(bcf_t *bp, bcf_hdr_t *h, bcf1_t *b)
 	str.l = 0; str.m = b->m_str; str.s = b->str;
 	rn.l = rn.m = h->l_nm; rn.s = h->name;
 	if (ks_getuntil(v->ks, '\n', &v->line, &dret) < 0) return -1;
+	b->n_smpl = h->n_smpl;
 	for (p = kstrtok(v->line.s, "\t", &aux), k = 0; p; p = kstrtok(0, 0, &aux), ++k) {
 		*(char*)aux.p = 0;
 		if (k == 0) { // ref
@@ -156,7 +157,7 @@ int vcf_read(bcf_t *bp, bcf_hdr_t *h, bcf1_t *b)
 		} else if (k <= 8) { // variable length strings
 			kputs(p, &str); kputc('\0', &str);
 			b->l_str = str.l; b->m_str = str.m; b->str = str.s;
-			if (k == 8) bcf_sync(h->n_smpl, b);
+			if (k == 8) bcf_sync(b);
 		} else { // k > 9
 			if (strncmp(p, "./.", 3) == 0) {
 				for (i = 0; i < b->n_gi; ++i) {