X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bcftools%2Fprob1.h;h=3f89dda5fafb59278e8e60cadcd82fe46fb0eaf0;hb=d382711a770f67a72b9af3bfd98a88fbced34f64;hp=eb4dc9216c27358712c98ec6444f5ea249ad6242;hpb=9cbf6422499eaa8dbb09ff9b873306202be5872f;p=samtools.git

diff --git a/bcftools/prob1.h b/bcftools/prob1.h
index eb4dc92..3f89dda 100644
--- a/bcftools/prob1.h
+++ b/bcftools/prob1.h
@@ -7,10 +7,10 @@ struct __bcf_p1aux_t;
 typedef struct __bcf_p1aux_t bcf_p1aux_t;
 
 typedef struct {
-	int rank0;
+	int rank0, perm_rank; // NB: perm_rank is always set to -1 by bcf_p1_cal()
 	double f_em, f_exp, f_flat, p_ref_folded, p_ref, p_var_folded, p_var;
 	double cil, cih;
-	double pc[4];
+	double cmp[3], p_chi2; // used by contrast2()
 	double g[3];
 } bcf_p1rst_t;