X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bcftools%2Fprob1.h;h=38275349750bde05f386387a36dc6ffdc0466223;hb=7943d9b7b1c159da840cbcfeb9cb277bb58474f2;hp=96beb0435806a693357f9d2dc4954857ed7d1065;hpb=f27c5d351576e00cece3708adcb386da61fe7b7f;p=samtools.git

diff --git a/bcftools/prob1.h b/bcftools/prob1.h
index 96beb04..3827534 100644
--- a/bcftools/prob1.h
+++ b/bcftools/prob1.h
@@ -8,7 +8,10 @@ typedef struct __bcf_p1aux_t bcf_p1aux_t;
 
 typedef struct {
 	int rank0;
-	double f_em, f_exp, f_flat, p_ref, g[3];
+	double f_em, f_exp, f_flat, p_ref;
+	double cil, cih;
+	double pc[4];
+	double g[3];
 } bcf_p1rst_t;
 
 #define MC_PTYPE_FULL  1
@@ -21,10 +24,15 @@ extern "C" {
 
 	bcf_p1aux_t *bcf_p1_init(int n);
 	void bcf_p1_init_prior(bcf_p1aux_t *ma, int type, double theta);
+	void bcf_p1_init_subprior(bcf_p1aux_t *ma, int type, double theta);
 	void bcf_p1_destroy(bcf_p1aux_t *ma);
 	int bcf_p1_cal(bcf1_t *b, bcf_p1aux_t *ma, bcf_p1rst_t *rst);
 	int bcf_p1_call_gt(const bcf_p1aux_t *ma, double f0, int k);
 	void bcf_p1_dump_afs(bcf_p1aux_t *ma);
+	int bcf_p1_read_prior(bcf_p1aux_t *ma, const char *fn);
+	long double bcf_p1_cal_g3(bcf_p1aux_t *p1a, double g[3]);
+	int bcf_p1_set_n1(bcf_p1aux_t *b, int n1);
+	void bcf_p1_set_folded(bcf_p1aux_t *p1a); // only effective when set_n1() is not called
 
 #ifdef __cplusplus
 }