X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bcftools%2Fcall1.c;h=dda4164d111a55747d85f74fd814c90a4bab11d4;hb=3f820f8c565a8162d835a321a5c0ecdd9567d820;hp=14a1570a13d6820152359e583c9c69d42d1021dd;hpb=607d7a0ab79152be4153fa09861cfa889488f2c7;p=samtools.git

diff --git a/bcftools/call1.c b/bcftools/call1.c
index 14a1570..dda4164 100644
--- a/bcftools/call1.c
+++ b/bcftools/call1.c
@@ -319,7 +319,7 @@ int bcfview(int argc, char *argv[])
 	while ((c = getopt(argc, argv, "FN1:l:cC:eHAGvbSuP:t:p:QgLi:IMs:D:U:X:d:T:Ywm:K:")) >= 0) {
 		switch (c) {
 		case '1': vc.n1 = atoi(optarg); break;
-		case 'l': vc.bed = bed_read(optarg); break;
+		case 'l': vc.bed = bed_read(optarg); if (!vc.bed) { fprintf(stderr,"Could not read \"%s\"\n", optarg); return 1; } break;
 		case 'D': vc.fn_dict = strdup(optarg); break;
 		case 'F': vc.flag |= VC_FIX_PL; break;
 		case 'N': vc.flag |= VC_ACGT_ONLY; break;
@@ -436,7 +436,7 @@ int bcfview(int argc, char *argv[])
 			vc.sublist = calloc(vc.n_sub, sizeof(int));
 			hout = bcf_hdr_subsam(hin, vc.n_sub, vc.subsam, vc.sublist);
 		}
-		if (vc.flag & VC_CALL) write_header(hout);
+		write_header(hout); // always print the header
 		vcf_hdr_write(bout, hout);
 	}
 	if (vc.flag & VC_CALL) {