X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bcftools%2Fcall1.c;h=b0baee2ea1b346e24eadd2d9bccea0ed6e886f6a;hb=23e43ef6778e51eb2a71046282d1c21431520857;hp=69bd5f7700698dfe39207695328220a4d8eba248;hpb=5329dbb6df3eee6a46d875b9d50e7f1a869f6b25;p=samtools.git

diff --git a/bcftools/call1.c b/bcftools/call1.c
index 69bd5f7..b0baee2 100644
--- a/bcftools/call1.c
+++ b/bcftools/call1.c
@@ -495,7 +495,7 @@ int bcfview(int argc, char *argv[])
 			if (!(l > begin && end > b->pos)) continue;
 		}
 		++n_processed;
-		if (vc.flag & VC_QCNT) { // summarize the difference
+		if ((vc.flag & VC_QCNT) && !is_indel) { // summarize the difference
 			int x = bcf_min_diff(b);
 			if (x > 255) x = 255;
 			if (x >= 0) ++qcnt[x];