X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bcftools%2FMakefile;h=5a3dc763f8105ba3dc8db43db390a4b13c0ba252;hb=082c52f3cb5517db50987bf1dc43aef845c45fd8;hp=ec3fa746a61dcd5cf959898df9b9ec00c59712a1;hpb=fd187467e3c5f026a4d934c5b0cb68a42939f6e1;p=samtools.git

diff --git a/bcftools/Makefile b/bcftools/Makefile
index ec3fa74..5a3dc76 100644
--- a/bcftools/Makefile
+++ b/bcftools/Makefile
@@ -1,17 +1,17 @@
 CC=			gcc
-CFLAGS=		-g -Wall -O2 #-fPIC #-m64 #-arch ppc
+CFLAGS=		-g -Wall -O2 #-m64 #-arch ppc
 DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE
-LOBJS=		bcf.o bcfutils.o prob1.o index.o
+LOBJS=		bcf.o vcf.o bcfutils.o prob1.o kfunc.o index.o fet.o
 OMISC=		..
-AOBJS=		vcfout.o main.o $(OMISC)/kstring.o $(OMISC)/bgzf.o $(OMISC)/knetfile.o
+AOBJS=		call1.o main.o $(OMISC)/kstring.o $(OMISC)/bgzf.o $(OMISC)/knetfile.o
 PROG=		bcftools
-INCLUDES=	-I..
+INCLUDES=	
 SUBDIRS=	.
 
 .SUFFIXES:.c .o
 
 .c.o:
-		$(CC) -c $(CFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@
+		$(CC) -c $(CFLAGS) $(DFLAGS) -I.. $(INCLUDES) $< -o $@
 
 all-recur lib-recur clean-recur cleanlocal-recur install-recur:
 		@target=`echo $@ | sed s/-recur//`; \