X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bayesian.h;h=fa6590ab98a393d5d4907102db4401704071e5f9;hb=4a2d841cb97fb02351022efe9d7068b1dc212bf9;hp=7100bf33b00c3fa85bd0c928c00daf82647f851a;hpb=f27b66ce6415eb14c434f9850019c7cf140e023e;p=mothur.git

diff --git a/bayesian.h b/bayesian.h
index 7100bf3..fa6590a 100644
--- a/bayesian.h
+++ b/bayesian.h
@@ -19,16 +19,11 @@ class Bayesian : public Classify {
 	
 public:
 	Bayesian(string, string, string, int, int, int);
-	~Bayesian() {};
+	~Bayesian();
 	
 	string getTaxonomy(Sequence*);
-	//map<string, int> getConfidenceScores() { return taxConfidenceScore; }
 	
 private:
-	//map<string, vector<double> > taxonomyProbability;	//probability of a word being in a given taxonomy. 
-													//taxonomyProbability[bacteria;][0] = probabtility that a sequence within bacteria; would contain kmer 0;
-													//taxonomyProbability[bacteria;][1] = probabtility that a sequence within bacteria; would contain kmer 1...
-	
 	vector< vector<float> > wordGenusProb;	//vector of maps from genus to probability
 												//wordGenusProb[0][392] = probability that a sequence within genus that's index in the tree is 392 would contain kmer 0;
 	
@@ -39,8 +34,7 @@ private:
 	
 	string bootstrapResults(vector<int>, int, int);
 	int getMostProbableTaxonomy(vector<int>);
-	void readProbFile(ifstream&, ifstream&);
-	//map<string, int> parseTaxMap(string);
+	void readProbFile(ifstream&, ifstream&, string, string);
 	
 };