X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bayesian.h;h=a1f693bb8f815dd0a6cb1d6155e9c032caf6fcea;hb=d154abda2a21879424002f28c50c6e0965865acf;hp=70757be9ecf2a4c6791fd0fec7c9f74ab8a13501;hpb=cd9dbd8b53bbe32af3e9c6bead4aa6d796a278a5;p=mothur.git diff --git a/bayesian.h b/bayesian.h index 70757be..a1f693b 100644 --- a/bayesian.h +++ b/bayesian.h @@ -19,13 +19,13 @@ class Bayesian : public Classify { public: Bayesian(string, string, string, int, int, int); - ~Bayesian() {}; + ~Bayesian(); string getTaxonomy(Sequence*); private: vector< vector > wordGenusProb; //vector of maps from genus to probability - //wordGenusProb[0][392] = probability that a sequence within genus that's index in the tree is 392 would contain kmer 0; + //wordGenusProb[0][392] = probability that a sequence within genus that's index in the tree is 392 would contain kmer 0; vector genusTotals; vector genusNodes; //indexes in phyloTree where genus' are located @@ -35,6 +35,7 @@ private: string bootstrapResults(vector, int, int); int getMostProbableTaxonomy(vector); void readProbFile(ifstream&, ifstream&, string, string); + bool checkReleaseDate(ifstream&, ifstream&, ifstream&, ifstream&); };