X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bayesian.h;fp=bayesian.h;h=6e35e9f8bd485734962e55a140f2dbb134cc8110;hb=92f998cc7debc4bf3e8594848586b8153d96db16;hp=7100bf33b00c3fa85bd0c928c00daf82647f851a;hpb=d5bf2c1354d0811a33394d918b15620606560d58;p=mothur.git

diff --git a/bayesian.h b/bayesian.h
index 7100bf3..6e35e9f 100644
--- a/bayesian.h
+++ b/bayesian.h
@@ -22,13 +22,8 @@ public:
 	~Bayesian() {};
 	
 	string getTaxonomy(Sequence*);
-	//map<string, int> getConfidenceScores() { return taxConfidenceScore; }
 	
 private:
-	//map<string, vector<double> > taxonomyProbability;	//probability of a word being in a given taxonomy. 
-													//taxonomyProbability[bacteria;][0] = probabtility that a sequence within bacteria; would contain kmer 0;
-													//taxonomyProbability[bacteria;][1] = probabtility that a sequence within bacteria; would contain kmer 1...
-	
 	vector< vector<float> > wordGenusProb;	//vector of maps from genus to probability
 												//wordGenusProb[0][392] = probability that a sequence within genus that's index in the tree is 392 would contain kmer 0;
 	
@@ -40,7 +35,6 @@ private:
 	string bootstrapResults(vector<int>, int, int);
 	int getMostProbableTaxonomy(vector<int>);
 	void readProbFile(ifstream&, ifstream&);
-	//map<string, int> parseTaxMap(string);
 	
 };