X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bamtk.c;h=f827aecb07dab38749212ccbadf80cbf6131e6c6;hb=2ec779405b1f89e1407c24956bbb3af584234bc9;hp=3386836e04e3a0b44eb47ff9d925d0db20b8ea90;hpb=63a8030e548830615a3dd9debd7d093c3096f9af;p=samtools.git

diff --git a/bamtk.c b/bamtk.c
index 3386836..f827aec 100644
--- a/bamtk.c
+++ b/bamtk.c
@@ -4,7 +4,7 @@
 #include "bam.h"
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.5c (r385)"
+#define PACKAGE_VERSION "0.1.5-18 (r423)"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);
@@ -77,7 +77,7 @@ static int usage()
 	fprintf(stderr, "         merge       merge multiple sorted alignment files\n");
 	fprintf(stderr, "         pileup      generate pileup output\n");
 	fprintf(stderr, "         faidx       index/extract FASTA\n");
-#ifndef _NO_CURSES
+#if _CURSES_LIB != 0
 	fprintf(stderr, "         tview       text alignment viewer\n");
 #endif
 	fprintf(stderr, "         index       index alignment\n");
@@ -85,7 +85,7 @@ static int usage()
 	fprintf(stderr, "         rmdup       remove PCR duplicates\n");
 	fprintf(stderr, "         glfview     print GLFv3 file\n");
 	fprintf(stderr, "         flagstat    simple stats\n");
-	fprintf(stderr, "         fillmd      fill the MD tag and change identical base to =\n");
+	fprintf(stderr, "         fillmd      recalculate MD/NM tags and '=' bases\n");
 	fprintf(stderr, "\n");
 	return 1;
 }
@@ -107,7 +107,7 @@ int main(int argc, char *argv[])
 	else if (strcmp(argv[1], "flagstat") == 0) return bam_flagstat(argc-1, argv+1);
 	else if (strcmp(argv[1], "tagview") == 0) return bam_tagview(argc-1, argv+1);
 	else if (strcmp(argv[1], "fillmd") == 0) return bam_fillmd(argc-1, argv+1);
-#ifndef _NO_CURSES
+#if _CURSES_LIB != 0
 	else if (strcmp(argv[1], "tview") == 0) return bam_tview_main(argc-1, argv+1);
 #endif
 	else {