X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bamtk.c;h=89f7e80d8b12cf26fb4d450eb5f695c1ab2bb242;hb=0735c4ca30725f8f41070890b0e8eb6439846c54;hp=0594b119ba13ea8960fec6601c88ebf7fcf5128e;hpb=aee93c83c1c7ff30c2c959a14877cf8a4e2d8f92;p=samtools.git

diff --git a/bamtk.c b/bamtk.c
index 0594b11..89f7e80 100644
--- a/bamtk.c
+++ b/bamtk.c
@@ -9,7 +9,7 @@
 #endif
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.7-14 (r591)"
+#define PACKAGE_VERSION "0.1.10-3 (r833)"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);
@@ -23,7 +23,7 @@ int bam_mating(int argc, char *argv[]);
 int bam_rmdup(int argc, char *argv[]);
 int bam_flagstat(int argc, char *argv[]);
 int bam_fillmd(int argc, char *argv[]);
-
+int bam_idxstats(int argc, char *argv[]);
 int main_samview(int argc, char *argv[]);
 int main_import(int argc, char *argv[]);
 int main_reheader(int argc, char *argv[]);
@@ -86,6 +86,7 @@ static int usage()
 	fprintf(stderr, "         tview       text alignment viewer\n");
 #endif
 	fprintf(stderr, "         index       index alignment\n");
+	fprintf(stderr, "         idxstats    BAM index stats (r595 or later)\n");
 	fprintf(stderr, "         fixmate     fix mate information\n");
 	fprintf(stderr, "         glfview     print GLFv3 file\n");
 	fprintf(stderr, "         flagstat    simple stats\n");
@@ -114,6 +115,7 @@ int main(int argc, char *argv[])
 	else if (strcmp(argv[1], "merge") == 0) return bam_merge(argc-1, argv+1);
 	else if (strcmp(argv[1], "sort") == 0) return bam_sort(argc-1, argv+1);
 	else if (strcmp(argv[1], "index") == 0) return bam_index(argc-1, argv+1);
+	else if (strcmp(argv[1], "idxstats") == 0) return bam_idxstats(argc-1, argv+1);
 	else if (strcmp(argv[1], "faidx") == 0) return faidx_main(argc-1, argv+1);
 	else if (strcmp(argv[1], "fixmate") == 0) return bam_mating(argc-1, argv+1);
 	else if (strcmp(argv[1], "rmdup") == 0) return bam_rmdup(argc-1, argv+1);