X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bamtk.c;h=6187e3241c6547297767b6cce0f7ba5d21999afe;hb=218ac0c8ce2bae53d9a55b85986f777ce5f04432;hp=daae6ab2fd967dd1e4e0303d82b4e0e4fb299c4f;hpb=f87674c1c5924b5731aa86ac849553d1b44e52de;p=samtools.git

diff --git a/bamtk.c b/bamtk.c
index daae6ab..6187e32 100644
--- a/bamtk.c
+++ b/bamtk.c
@@ -1,10 +1,15 @@
 #include <stdio.h>
 #include <unistd.h>
 #include <assert.h>
+#include <fcntl.h>
 #include "bam.h"
 
+#ifdef _USE_KNETFILE
+#include "knetfile.h"
+#endif
+
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.5-15 (r419)"
+#define PACKAGE_VERSION "0.1.5-22 (r432)"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);
@@ -92,6 +97,13 @@ static int usage()
 
 int main(int argc, char *argv[])
 {
+#ifdef _WIN32
+	setmode(fileno(stdout), O_BINARY);
+	setmode(fileno(stdin),  O_BINARY);
+#ifdef _USE_KNETFILE
+	knet_win32_init();
+#endif
+#endif
 	if (argc < 2) return usage();
 	if (strcmp(argv[1], "view") == 0) return main_samview(argc-1, argv+1);
 	else if (strcmp(argv[1], "import") == 0) return main_import(argc-1, argv+1);