X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam_plcmd.c;h=ccc5eb95a8c397b76729f0d2ff3ce3ea4da77fdc;hb=6ad0dc55ff3abf908a99935321ff8fa5efed4d88;hp=cbb55cc3a5a7d1643b729c63bd1c36ad206e6387;hpb=5f226a4a811f70170a3d1818463d4f9c15a21c85;p=samtools.git

diff --git a/bam_plcmd.c b/bam_plcmd.c
index cbb55cc..ccc5eb9 100644
--- a/bam_plcmd.c
+++ b/bam_plcmd.c
@@ -174,7 +174,7 @@ static int pileup_func(uint32_t tid, uint32_t pos, int n, const bam_pileup1_t *p
 	// update d->ref if necessary
 	if (d->fai && (int)tid != d->tid) {
 		free(d->ref);
-		d->ref = fai_fetch(d->fai, d->h->target_name[tid], &d->len);
+		d->ref = faidx_fetch_seq(d->fai, d->h->target_name[tid], 0, 0x7fffffff, &d->len);
 		d->tid = tid;
 	}
 	rb = (d->ref && (int)pos < d->len)? d->ref[pos] : 'N';