X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam_plcmd.c;h=b562b94c7a2f150bd26b3b19b6343c1d8b09dbbc;hb=1bb8e1e608757f82c4c5e89fbe0912a7883e9890;hp=29fbb9cd6219a9803488e07b32c8e648b835d1c2;hpb=6ed91e9cf6d11c718bc8b2bea412108555d55bba;p=samtools.git

diff --git a/bam_plcmd.c b/bam_plcmd.c
index 29fbb9c..b562b94 100644
--- a/bam_plcmd.c
+++ b/bam_plcmd.c
@@ -904,7 +904,7 @@ int bam_mpileup(int argc, char *argv[])
 		fprintf(stderr, "         -o INT      Phred-scaled gap open sequencing error probability [%d]\n", mplp.openQ);
 		fprintf(stderr, "         -e INT      Phred-scaled gap extension seq error probability [%d]\n", mplp.extQ);
 		fprintf(stderr, "         -h INT      coefficient for homopolyer errors [%d]\n", mplp.tandemQ);
-		fprintf(stderr, "         -A          use anomolous read pairs in SNP/INDEL calling\n");
+		fprintf(stderr, "         -A          use anomalous read pairs in SNP/INDEL calling\n");
 		fprintf(stderr, "         -g          generate BCF output\n");
 		fprintf(stderr, "         -u          do not compress BCF output\n");
 		fprintf(stderr, "         -B          disable BAQ computation\n");