X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam_plcmd.c;h=487080529a6820d0540e2bb10a6161b84a221698;hb=80658e4d152b53bd55927c432ceece7702ab49d7;hp=0aa44f5853e3126d8d403b05b1f9d45335081b61;hpb=c350a570e955d5b4c2c13f607b7442df6d332c67;p=samtools.git

diff --git a/bam_plcmd.c b/bam_plcmd.c
index 0aa44f5..4870805 100644
--- a/bam_plcmd.c
+++ b/bam_plcmd.c
@@ -287,7 +287,7 @@ static int mpileup(mplp_conf_t *conf, int n, char **fn)
 		if (conf->bed && tid >= 0 && !bed_overlap(conf->bed, h->target_name[tid], pos, pos+1)) continue;
 		if (tid != ref_tid) {
 			free(ref); ref = 0;
-			if (conf->fai) ref = fai_fetch(conf->fai, h->target_name[tid], &ref_len);
+			if (conf->fai) ref = faidx_fetch_seq(conf->fai, h->target_name[tid], 0, 0x7fffffff, &ref_len);
 			for (i = 0; i < n; ++i) data[i]->ref = ref, data[i]->ref_id = tid;
 			ref_tid = tid;
 		}