X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam_plcmd.c;h=1b15aaec8b274e5ba92af6470c71a2f913f2a480;hb=0bb4884ffb1f4c9485efee763dd63b575f2c1381;hp=a3e6aeb614927733676b2b25e4592786cb14ef2e;hpb=2d2be1edb0548e95b771bc9c79cff48eb5d2e1f5;p=samtools.git

diff --git a/bam_plcmd.c b/bam_plcmd.c
index a3e6aeb..1b15aae 100644
--- a/bam_plcmd.c
+++ b/bam_plcmd.c
@@ -729,6 +729,7 @@ static int mpileup(mplp_conf_t *conf, int n, char **fn)
 			bcf_call2bcf(tid, pos, &bc, b, (conf->flag&(MPLP_FMT_DP|MPLP_FMT_SP))? bcr : 0, (conf->flag&MPLP_FMT_SP));
 			bcf_write(bp, bh, b);
 			bcf_destroy(b);
+//			bcf_call_gap_prep(gplp.n, gplp.n_plp, gplp.plp, pos, bca, ref);
 		} else {
 			printf("%s\t%d\t%c", h->target_name[tid], pos + 1, (ref && pos < ref_len)? ref[pos] : 'N');
 			for (i = 0; i < n; ++i) {