X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam_mcns.h;h=cff6e57d28047950be347e7d873d940638baa385;hb=71355852e510ac7937d552117557b9dbf07cd557;hp=89879fbc0f9cb76e924b8911fdc74442bc513c88;hpb=a11820a502707a04d5218a6a1cc32f8858b76a32;p=samtools.git

diff --git a/bam_mcns.h b/bam_mcns.h
index 89879fb..cff6e57 100644
--- a/bam_mcns.h
+++ b/bam_mcns.h
@@ -6,11 +6,15 @@
 struct __mc_aux_t;
 typedef struct __mc_aux_t mc_aux_t;
 
+#define MC_PTYPE_FULL  1
+#define MC_PTYPE_COND2 2
+
 #ifdef __cplusplus
 extern "C" {
 #endif
 
 	mc_aux_t *mc_init(int n);
+	void mc_init_prior(mc_aux_t *ma, int type, double theta);
 	void mc_destroy(mc_aux_t *ma);
 	double mc_freq0(int ref, int *n, const bam_pileup1_t **plp, mc_aux_t *ma, int *_ref, int *alt);
 	double mc_freq_iter(double f0, mc_aux_t *ma);