X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam_mcns.h;h=6f1a3109b666da3c59dd056922135513ad38faf3;hb=6dc53c5ab2964e68e8936850d2339d047d2433ef;hp=5c7c42026def5133b2468e882785d756dfaee750;hpb=d742c10178d8981ce062cb1f993149cfe9876613;p=samtools.git

diff --git a/bam_mcns.h b/bam_mcns.h
index 5c7c420..6f1a310 100644
--- a/bam_mcns.h
+++ b/bam_mcns.h
@@ -8,16 +8,15 @@ typedef struct __mc_aux_t mc_aux_t;
 
 typedef struct {
 	// O(n)
-	int ref, alt;
+	int ref, alt, alt2;
 	double f_em, f_naive, f_nielsen;
 	// O(n^2)
-	double PD, p_ref, f_exp;
-	// O(n^3)
-	double f_map, p_map; // map=maximum a posterior
+	double p_ref, f_exp;
 } mc_rst_t;
 
 #define MC_PTYPE_FULL  1
 #define MC_PTYPE_COND2 2
+#define MC_PTYPE_FLAT  3
 
 #ifdef __cplusplus
 extern "C" {