X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam_maqcns.h;h=28733a5dbd8f467105d736bc4ffa1919be4d9e56;hb=5c4ef838b286eeb6fffc7c41ffbb776281963c8e;hp=6cc5355fc2db2b1b19e6a3d2d330306a240fa15a;hpb=b6f550edaa9384857879894bf01399fad76dac37;p=samtools.git

diff --git a/bam_maqcns.h b/bam_maqcns.h
index 6cc5355..28733a5 100644
--- a/bam_maqcns.h
+++ b/bam_maqcns.h
@@ -3,11 +3,15 @@
 
 #include "glf.h"
 
+#define BAM_ERRMOD_MAQ2 0
+#define BAM_ERRMOD_MAQ  1
+#define BAM_ERRMOD_SOAP 2
+
 struct __bmc_aux_t;
 
 typedef struct {
 	float het_rate, theta;
-	int n_hap, cap_mapQ, is_soap;
+	int n_hap, cap_mapQ, errmod;
 
 	float eta, q_r;
 	double *fk, *coef;