X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam_lpileup.c;h=1562170e9159e8b53f2d65d7c87e4a59e8acecac;hb=1a23a35867ee992dcffcf3d17df2b7d41732f33b;hp=368028766842db8b9b71c82c4fc85a2eb3a87092;hpb=635998cfe030da5f3dbec42a6daa3ca82fa5c871;p=samtools.git

diff --git a/bam_lpileup.c b/bam_lpileup.c
index 3680287..1562170 100644
--- a/bam_lpileup.c
+++ b/bam_lpileup.c
@@ -102,7 +102,7 @@ static int tview_func(uint32_t tid, uint32_t pos, int n, const bam_pileup1_t *pl
 			} else tv->cur_level[i] = ++tv->max_level;
 		} else {
 			tv->cur_level[i] = tv->pre_level[l++];
-			if (p->qpos == p->b->core.l_qseq - 1) { // then return a free slot
+			if (p->is_tail) { // then return a free slot
 				tv->tail->level = tv->cur_level[i];
 				tv->tail->next = mp_alloc(tv->mp);
 				tv->tail = tv->tail->next;
@@ -150,6 +150,16 @@ static int tview_func(uint32_t tid, uint32_t pos, int n, const bam_pileup1_t *pl
 			tv->pre_level[l++] = tv->pre_level[i];
 	}
 	tv->n_pre = l;
+/*
+	fprintf(stderr, "%d\t", pos+1);
+	for (i = 0; i < n; ++i) {
+		const bam_pileup1_t *p = pl + i;
+		if (p->is_head) fprintf(stderr, "^");
+		if (p->is_tail) fprintf(stderr, "$");
+		fprintf(stderr, "%d,", p->level);
+	}
+	fprintf(stderr, "\n");
+*/
 	return 0;
 }
 
@@ -167,11 +177,17 @@ bam_lplbuf_t *bam_lplbuf_init(bam_pileup_f func, void *data)
 
 void bam_lplbuf_destroy(bam_lplbuf_t *tv)
 {
-	mp_free(tv->mp, tv->head);
-	mp_destroy(tv->mp);
+	freenode_t *p, *q;
 	free(tv->cur_level); free(tv->pre_level);
 	bam_plbuf_destroy(tv->plbuf);
 	free(tv->aux);
+	for (p = tv->head; p->next;) {
+		q = p->next;
+		mp_free(tv->mp, p); p = q;
+	}
+	mp_free(tv->mp, p);
+	assert(tv->mp->cnt == 0);
+	mp_destroy(tv->mp);
 	free(tv);
 }