X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam_lite.c;h=93af6c4a8d96e226f2998c80ab929b93f61a4843;hb=f8941aebcb194dbe1ff32c161d3cd51d80805d5d;hp=12c719cccde34ce67916530e7dc299454d7591c5;hpb=ebb53787a79a02cfa51ce5baa303dc9cb805205f;p=samtools.git

diff --git a/bam_lite.c b/bam_lite.c
index 12c719c..93af6c4 100644
--- a/bam_lite.c
+++ b/bam_lite.c
@@ -552,6 +552,22 @@ int bam_plbuf_push(const bam1_t *b, bam_plbuf_t *buf)
 	return 0;
 }
 
+int bam_pileup_file(bamFile fp, int mask, bam_pileup_f func, void *func_data)
+{
+	bam_plbuf_t *buf;
+	int ret;
+	bam1_t *b;
+	b = bam_init1();
+	buf = bam_plbuf_init(func, func_data);
+	bam_plbuf_set_mask(buf, mask);
+	while ((ret = bam_read1(fp, b)) >= 0)
+		bam_plbuf_push(b, buf);
+	bam_plbuf_push(0, buf);
+	bam_plbuf_destroy(buf);
+	bam_destroy1(b);
+	return 0;
+}
+
 /**********************
  *** from bam_aux.c ***
  **********************/