X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam_index.c;h=328f011c16ccf4a9a558702317ecdecfbcc5212a;hb=07f8f0c963bd0ad034153758863cd6a700b7cade;hp=0638a2e826a1ceb10f86a144ca42c78355bcae35;hpb=82797ab5f5ba03634967e19822e11a491c8e6198;p=samtools.git

diff --git a/bam_index.c b/bam_index.c
index 0638a2e..328f011 100644
--- a/bam_index.c
+++ b/bam_index.c
@@ -212,7 +212,7 @@ bam_index_t *bam_index_core(bamFile fp)
 	}
 	if (save_tid >= 0) {
 		insert_offset(idx->index[save_tid], save_bin, save_off, bam_tell(fp));
-		insert_offset(idx->index[save_tid], BAM_MAX_BIN, off_beg, off_end);
+		insert_offset(idx->index[save_tid], BAM_MAX_BIN, off_beg, bam_tell(fp));
 		insert_offset(idx->index[save_tid], BAM_MAX_BIN, n_mapped, n_unmapped);
 	}
 	merge_chunks(idx);