X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam_aux.c;fp=bam_aux.c;h=6a82d9affb8e4d0341cf3ae26997e4e1bc72f594;hb=c92c84dba4871d9eb21cb8ea83dbcb9e0d0f95b9;hp=894ae628c11958dc0ed0ca49ca95d170e54ab9c7;hpb=54f5a850f38a820669d614029b151080172eb953;p=samtools.git

diff --git a/bam_aux.c b/bam_aux.c
index 894ae62..6a82d9a 100644
--- a/bam_aux.c
+++ b/bam_aux.c
@@ -28,7 +28,7 @@ uint8_t *bam_aux_get_core(bam1_t *b, const char tag[2])
 #define __skip_tag(s) do { \
 		int type = toupper(*(s));										\
 		++(s);															\
-		if (type == 'C') ++(s);											\
+		if (type == 'C' || type == 'A') ++(s);							\
 		else if (type == 'S') (s) += 2;									\
 		else if (type == 'I' || type == 'F') (s) += 4;					\
 		else if (type == 'D') (s) += 8;									\
@@ -42,6 +42,7 @@ uint8_t *bam_aux_get(const bam1_t *b, const char tag[2])
 	s = bam1_aux(b);
 	while (s < b->data + b->data_len) {
 		int x = (int)s[0]<<8 | s[1];
+		printf("%c%c\n", s[0], s[1]);
 		s += 2;
 		if (x == y) return s;
 		__skip_tag(s);