X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam2bcf.h;h=b2b1825cd59a17a1973b040f722f1efb13ef24f0;hb=7c3295ba455fdc9269156dd1246c92ea5df3efd4;hp=46f91f9c7ad282ad033ce6391461b18f34d83496;hpb=125ac895854cf760a04192a257a4279f2c541164;p=samtools.git

diff --git a/bam2bcf.h b/bam2bcf.h
index 46f91f9..b2b1825 100644
--- a/bam2bcf.h
+++ b/bam2bcf.h
@@ -31,7 +31,7 @@ typedef struct __bcf_callaux_t {
 
 typedef struct {
 	int depth, n_supp, ori_depth, qsum[4];
-	int anno[16];
+	unsigned int anno[16];
 	float p[25];
 } bcf_callret1_t;
 
@@ -40,10 +40,11 @@ typedef struct {
     float qsum[4];
 	int n, n_alleles, shift, ori_ref, unseen;
 	int n_supp; // number of supporting non-reference reads
-	int anno[16], depth, ori_depth;
+	unsigned int anno[16], depth, ori_depth;
 	uint8_t *PL;
     float vdb; // variant distance bias
     float read_pos_bias;
+    struct { float avg, var; int dp; } read_pos;
 } bcf_call_t;
 
 #ifdef __cplusplus