X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam2bcf.h;h=958567241936a4c54feae501c725ad77a6e3f1be;hb=7d93d105e56d3bcee4be728077716794dddf21e7;hp=26b022c08e89e3597bd6e400690d42bd7ecabe38;hpb=30004e9139b96449fa34831af2fd8e860567a29d;p=samtools.git

diff --git a/bam2bcf.h b/bam2bcf.h
index 26b022c..9585672 100644
--- a/bam2bcf.h
+++ b/bam2bcf.h
@@ -9,7 +9,9 @@
 
 typedef struct __bcf_callaux_t {
 	int capQ, min_baseQ;
-	int openQ, extQ, tandemQ;
+	int openQ, extQ, tandemQ; // for indels
+	int min_support; // for collecting indel candidates
+	double min_frac; // for collecting indel candidates
 	// for internal uses
 	int max_bases;
 	int indel_types[4];