X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam2bcf.h;h=8ac6b79abfb60abaeefc29451923ec197c2f6c7a;hb=3a1bd4d97b4d58148b5a7fd845a3b6a023eecbed;hp=a31ac9dece3d7ed9a6f740e3452985c50abc6c67;hpb=700d451b57c06a5fc842b24be0d69d4a251c91df;p=samtools.git

diff --git a/bam2bcf.h b/bam2bcf.h
index a31ac9d..8ac6b79 100644
--- a/bam2bcf.h
+++ b/bam2bcf.h
@@ -14,8 +14,8 @@
 typedef struct __bcf_callaux_t {
 	int capQ, min_baseQ;
 	int openQ, extQ, tandemQ; // for indels
-	int min_support; // for collecting indel candidates
-	double min_frac; // for collecting indel candidates
+	int min_support, max_support; // for collecting indel candidates
+	double min_frac, max_frac; // for collecting indel candidates
     int per_sample_flt; // indel filtering strategy
 	// for internal uses
 	int max_bases;
@@ -36,6 +36,7 @@ typedef struct {
 
 typedef struct {
 	int a[5]; // alleles: ref, alt, alt2, alt3
+    float qsum[4];
 	int n, n_alleles, shift, ori_ref, unseen;
 	int n_supp; // number of supporting non-reference reads
 	int anno[16], depth, ori_depth;