X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam2bcf.h;h=73624c0a6bdc789d892aa4dc9d89ac07f7adcc38;hb=cbe42056eafe54cb371f61f6360bef670b51a3da;hp=655174f585f663b54c0e10327df45eddb8942616;hpb=95882d9fdab78fb90469798141d9308a65415fda;p=samtools.git

diff --git a/bam2bcf.h b/bam2bcf.h
index 655174f..73624c0 100644
--- a/bam2bcf.h
+++ b/bam2bcf.h
@@ -8,7 +8,8 @@ struct __bcf_callaux_t;
 typedef struct __bcf_callaux_t bcf_callaux_t;
 
 typedef struct {
-	int depth;
+	int depth, d[4];
+	int dsum[2], d2sum[2];
 	uint64_t sum_Q2;
 	float p[25], esum[5];
 } bcf_callret1_t;
@@ -16,7 +17,8 @@ typedef struct {
 typedef struct {
 	int a[5]; // alleles: ref, alt, alt2, alt3
 	int n, n_alleles, shift, ori_ref, unseen;
-	int depth, rmsQ;
+	int d[4], depth, rmsQ;
+	double davg[2], dstd[2];
 	uint8_t *PL;
 } bcf_call_t;