X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam2bcf.h;h=0dddb924dcf62fee4f1352a9a20eecb7001da450;hb=f69357a6a9e701f12d1f01c52cc0d2893bb2ac7a;hp=655174f585f663b54c0e10327df45eddb8942616;hpb=c0490a669e9f1f9257e4b02a263e92e842bf5357;p=samtools.git

diff --git a/bam2bcf.h b/bam2bcf.h
index 655174f..0dddb92 100644
--- a/bam2bcf.h
+++ b/bam2bcf.h
@@ -8,15 +8,15 @@ struct __bcf_callaux_t;
 typedef struct __bcf_callaux_t bcf_callaux_t;
 
 typedef struct {
-	int depth;
-	uint64_t sum_Q2;
-	float p[25], esum[5];
+	int depth, qsum[4];
+	int anno[16];
+	float p[25];
 } bcf_callret1_t;
 
 typedef struct {
 	int a[5]; // alleles: ref, alt, alt2, alt3
 	int n, n_alleles, shift, ori_ref, unseen;
-	int depth, rmsQ;
+	int anno[16], depth;
 	uint8_t *PL;
 } bcf_call_t;