X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam2bcf.h;fp=bam2bcf.h;h=4af080c4753b2070192bec5e04e16174ca5bb5f8;hb=cb5f44947629a68d16a48d32eef6e42a66e482fe;hp=958567241936a4c54feae501c725ad77a6e3f1be;hpb=2c05c1d8da65572e6587702ba13ad8a26b2200c2;p=samtools.git

diff --git a/bam2bcf.h b/bam2bcf.h
index 9585672..4af080c 100644
--- a/bam2bcf.h
+++ b/bam2bcf.h
@@ -26,6 +26,7 @@ typedef struct {
 	int depth, ori_depth, qsum[4];
 	int anno[16];
 	float p[25];
+    int mvd[3]; // mean variant distance, number of variant reads, average read length
 } bcf_callret1_t;
 
 typedef struct {
@@ -33,6 +34,7 @@ typedef struct {
 	int n, n_alleles, shift, ori_ref, unseen;
 	int anno[16], depth, ori_depth;
 	uint8_t *PL;
+    float vdb; // variant distance bias
 } bcf_call_t;
 
 #ifdef __cplusplus