X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam2bcf.c;h=de414d7176903dd323ced99f3b8de39396667517;hb=0735c4ca30725f8f41070890b0e8eb6439846c54;hp=fe447e6aafb610fb984d3e07c9c507a5572630ca;hpb=3d0fb2fa78f3cafc854fde0a9b5ea56047f2890a;p=samtools.git

diff --git a/bam2bcf.c b/bam2bcf.c
index fe447e6..de414d7 100644
--- a/bam2bcf.c
+++ b/bam2bcf.c
@@ -209,7 +209,7 @@ int bcf_call2bcf(int tid, int pos, bcf_call_t *bc, bcf1_t *b, bcf_callret1_t *bc
 		}
 		kputc('\0', &s);
 	} else if (bc->ori_ref == B2B_REF_MNP) {
-		for (j = 0; j < bca->indelreg; ++j) kputc(ref[pos+1+j], &s);
+		for (j = 0; j < bca->indelreg; ++j) kputc(ref[pos+j], &s);
 		kputc('\0', &s);
 		for (i = 1; i < 4; ++i) {
 			if (bc->a[i] < 0) break;