X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bam.h;h=163dc893e192d6eaa9ebfcc3b3b8614d142ca211;hb=2f8de7def998e2c804213aaf16cc42b3f4095167;hp=1195e75be3220a0ecfe569de249dc1a5a70780a5;hpb=f1222861f3824c28d35cd143f5565ca09d80f056;p=samtools.git

diff --git a/bam.h b/bam.h
index 1195e75..163dc89 100644
--- a/bam.h
+++ b/bam.h
@@ -315,6 +315,9 @@ extern "C" {
 	 */
 	bam_header_t *sam_header_read2(const char *fn_list);
 
+	bam_header_t *sam_header_read(tamFile fp);
+	int sam_header_parse(bam_header_t *h);
+
 #define sam_write1(header, b) bam_view1(header, b)
 
 	/*!
@@ -512,17 +515,6 @@ extern "C" {
 	 */
 	int bam_plbuf_push(const bam1_t *b, bam_plbuf_t *buf);
 
-	/*!
-	  @abstract         A more convenient interface to bam_plbuf_push()
-	  @param  fp        BAM file handler
-	  @param  func      user defined function
-	  @param  func_data user provided data
-
-	  @discussion The file position indicator must be placed right
-	  before the start of an alignment. See also bam_plbuf_push().
-	 */
-	int bam_pileup_file(bamFile fp, int mask, bam_pileup_f func, void *func_data);
-
 	struct __bam_lplbuf_t;
 	typedef struct __bam_lplbuf_t bam_lplbuf_t;