X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=amovacommand.cpp;h=492a096f76cc1de12514731f66514e8d632c0c5f;hb=6b32d112bb60e9f7eb6d4407a4eed4c49b67bced;hp=a78aafcbd92a344420c29598f6cac4456404a890;hpb=deba0af0ccdcb6005ed5b2b82649b137c63fbdf7;p=mothur.git

diff --git a/amovacommand.cpp b/amovacommand.cpp
index a78aafc..492a096 100644
--- a/amovacommand.cpp
+++ b/amovacommand.cpp
@@ -307,7 +307,7 @@ double AmovaCommand::runAMOVA(ofstream& AMOVAFile, map<string, vector<int> > gro
 		for(int i=0;i<iters;i++){
 			map<string, vector<int> > randomizedGroup = getRandomizedGroups(groupSampleMap);
 			double ssWithinRand = calcSSWithin(randomizedGroup);
-			if(ssWithinRand < ssWithinOrig){	counter++;	}
+			if(ssWithinRand <= ssWithinOrig){	counter++;	}
 		}
 		
 		double pValue = (double)counter / (double) iters;