X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=amovacommand.cpp;fp=amovacommand.cpp;h=13c8b2636680ee247cf05750cd57b6d5916b7d9c;hb=5e031adc86a1fc125c4abb3d4048f209d52f9b6d;hp=74fbda7ff6164128551bead9cfb4c8bfabb7ba0e;hpb=f6c7165727bc17a5fbbcbb774d75ccffeb7f3da5;p=mothur.git

diff --git a/amovacommand.cpp b/amovacommand.cpp
index 74fbda7..13c8b26 100644
--- a/amovacommand.cpp
+++ b/amovacommand.cpp
@@ -119,8 +119,8 @@ AmovaCommand::AmovaCommand(string option) {
 				phylipFileName = ""; 
 				
 				//check currentFiles for a phylip file
-				if (currentFiles->getPhylipFile() != "") {  phylipFileName = currentFiles->getPhylipFile(); m->mothurOut("Using " + phylipFileName + " as phylip file."); m->mothurOutEndLine();
-				}else { m->mothurOut("You must provide an phylip file."); m->mothurOutEndLine(); abort = true;  }
+				//if (currentFiles->getPhylipFile() != "") {  phylipFileName = currentFiles->getPhylipFile(); m->mothurOut("Using " + phylipFileName + " as phylip file."); m->mothurOutEndLine();
+				//}else { m->mothurOut("You must provide an phylip file."); m->mothurOutEndLine(); abort = true;  }
 			}	
 			
 			//check for required parameters
@@ -130,8 +130,8 @@ AmovaCommand::AmovaCommand(string option) {
 				designFileName = "";
 				
 				//check currentFiles for a design file
-				if (currentFiles->getDesignFile() != "") {  designFileName = currentFiles->getPhylipFile(); m->mothurOut("Using " + designFileName + " as phylip file."); m->mothurOutEndLine();
-				}else { m->mothurOut("You must provide an design file."); m->mothurOutEndLine(); abort = true;  }
+				//if (currentFiles->getDesignFile() != "") {  designFileName = currentFiles->getDesignFile(); m->mothurOut("Using " + designFileName + " as design file."); m->mothurOutEndLine();
+				//}else { m->mothurOut("You must provide an design file."); m->mothurOutEndLine(); abort = true;  }
 			}	
 
 			string temp = validParameter.validFile(parameters, "iters", false);