X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=alignmentdb.h;h=900aadc6eb8be36b9c0193f8d255a2fdc8312269;hb=8dd3c225255d7084e3aff8740aa4f1f1cabb367a;hp=a69b917388fcabb052ab453a4c9e8e93e55e3fb6;hpb=fdc1f6eaf544f695fc1511f24bddd7e6069c33ba;p=mothur.git

diff --git a/alignmentdb.h b/alignmentdb.h
index a69b917..900aadc 100644
--- a/alignmentdb.h
+++ b/alignmentdb.h
@@ -20,18 +20,17 @@ class AlignmentDB {
 
 public:
 
-	AlignmentDB(string, string, int, float, float, float, float);  //reads fastafile passed in and stores sequences
+	AlignmentDB(string, string, int, float, float, float, float, int);  //reads fastafile passed in and stores sequences
 	AlignmentDB(string);
+	AlignmentDB(const AlignmentDB& adb);
 	~AlignmentDB();
 	
 	Sequence findClosestSequence(Sequence*);
 	float getSearchScore()  {  return search->getSearchScore();  }
 	int getLongestBase()	{  return longest;  }
-	int MPISend(int);
-	int MPIRecv(int);
 	
 private:
-	int numSeqs, longest;
+	int numSeqs, longest, threadID;
 	string method;
 	
 	Database* search;