X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=alignmentdb.h;h=22d2dd35c044a652fabafbc5deb1bef3f2022391;hb=2431fce75705f16d6d7cab7a6f5fe02051d82ca5;hp=fe4e52628d477546703f44624d6854a0f6699ea1;hpb=ef3f6d42fe720cd6d91419e5e32f8c04d8765010;p=mothur.git

diff --git a/alignmentdb.h b/alignmentdb.h
index fe4e526..22d2dd3 100644
--- a/alignmentdb.h
+++ b/alignmentdb.h
@@ -21,6 +21,7 @@ class AlignmentDB {
 public:
 
 	AlignmentDB(string, string, int, float, float, float, float);  //reads fastafile passed in and stores sequences
+	AlignmentDB(string);
 	~AlignmentDB();
 	
 	Sequence findClosestSequence(Sequence*);
@@ -29,11 +30,12 @@ public:
 	
 private:
 	int numSeqs, longest;
-	float searchScore;
+	string method;
 	
 	Database* search;
 	vector<Sequence> templateSequences;
 	Sequence emptySequence;
+	MothurOut* m;
 };
 
 /**************************************************************************************************/